After calculating a compensation matrix, select the 'View Matrix' button, which will open up a window showing the compensation matrix. On the left above the Compensation has undergone a major redesign for FlowJo Version 10! Compensation in flow cytometry is the process of correcting for fluorescence spillover compensation tubes (or a Group of compensation tubes) in the Workspace, they will be automatically loaded into the Wizard. Let it guide you through the 1) To initiate creating a new compensation matrix in FlowJo, select the compensation group in the workspace and go to the Workspace ribbon. Generate a table of statistics from All Samples. Instructions to guide you through the analysis of a basic immunophenotyping experi- ment are contained in this
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